Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs117146570 chr10:133434490 A/G 1.95E-5 109 16.23 1.03 2.03 KM Plot
LAML rs117216037 chr17:39478530 G/T 0.000111 111 13.2 19.23 0 KM Plot
LAML rs117426195 chr7:105152540 C/G 0.000125 110 15.7 13.1 0 KM Plot
LAML rs117447760 chr16:71820651 C/T 0.000128 110 16.17 10.63 0 KM Plot
LAML rs117486289 chr12:120862344 A/T 3.64E-5 107 15.17 11.17 0 KM Plot
LAML rs11758529 chr6:34510838 G/A 6.5E-5 110 16.27 8.1 0 KM Plot
LAML rs11762907 chr7:135663642 C/A 9.82E-5 111 13.2 28.47 0 KM Plot
LAML rs11763111 chr7:135593335 C/T 0.000135 105 13.1 29.4 0 KM Plot
LAML rs11763742 chr7:135671473 A/G 0.000106 110 14.18 28.47 0 KM Plot
LAML rs11767713 chr7:135627783 C/G 0.000108 109 13.1 28.47 0 KM Plot
LAML rs11770007 chr7:135600640 G/A 0.000175 106 13.15 28.47 0 KM Plot
LAML rs11771783 chr7:135712764 C/T 1.49E-5 111 13.2 21.27 0 KM Plot
LAML rs117827305 chr10:133439609 G/C 1.95E-5 109 16.23 1.03 2.03 KM Plot
LAML rs11807661 chr1:95401199 A/C 8.61E-5 111 13.1 22.37 0 KM Plot
LAML rs11808784 chr1:95400729 G/T 8.61E-5 111 13.1 22.37 0 KM Plot